METABO-OPEN 2 in 2022
15 - 17 June 2022
Statistics & Testimonials
DATE: June 15th – 17th, 2022
Venue: Online!
Host: Fondazione Edmuch Mach, San Michele all’Adige, Italy
BRIEF PROGRAM:
After the success of the first METABO-OPEN Training School, which was followed by more than 100 people with 30 trainees for the hands-on sessions, we now propose a revised second edition of the school, full of new content, in order to implement best practices in managing data and metadata in metabolomics.
On Day 1 there will be plenary lectures concerning tools for data phenotyping and experimental design, workflow for untargeted metabolomics including preprocessing and quality assessment, spectral libraries, metabolite annotation, and identification; lectures on the role and the use of MetaboLights in hosting metabolomics studies, and applied examples of metabolomic studies in grapevine.
During the hand-on Days 2 and 3, reserved for a maximum of 30 trainees, there will be special classes on R and XCMS, MS-Dial, Metabo Analyst, MetaboLights, and metabolite annotations.
The work will be disseminated through the website (http://www.integrape.eu), social media (Facebook, Twitter), as well as through webinars.
FINAL PROGRAM (PDF)
DAY 1: 15 June 2022
Introductory part I. This part is open to a wider public.
Morning session 9:00 to 12:00 (Central European Time)
● Fulvio Mattivi [9.00 – 9.30] Introduction to FAIR data management in metabolomics and actual viticulture and wine science situations. PDF
● Éric Duchêne [9.30 – 10.10] How to describe a grapevine experiment and sample metadata. PDF
BREAK 30 min
● Pietro Franceschi [10.40 -11.10] Experimental Design.
● Marynka Ulaszewska [11.10 -11.50] Untargeted Metabolomic Workflow: from sample preparation to mass spectrometry analysis. PDF
Afternoon session 14:30-16:30 (Central European Time)
● Marynka Ulaszewska [15.00 -15.30] Spectral Libraries, metabolite annotation and identification. PDF
● Thomas Payne [16.10 -16.30] MetaboLights: the home for metabolomics experiments and derived information. PDF
DAY2: 16 June 2022
Morning session 9:00 to 12:00(Central European Time)
Hands-on activity: A guided walkthrough: a real data analysis task
● Group 1: R and XCMS (Pietro Franceschi, Mar Garcia-Aloy)
● Group 2: GUI/web-based analysis (Panagiotis Arapitsas, Marynka Ulaszewska, Christina Virgiliou)
Afternoon session 15:00-17.00 (Central European Time)
● continuous from the morning session
DAY 3: 17 June 2022
Morning session 9:00 to 12:00 (Central European Time)
Hands-on activity: A guided walkthrough: a real data analysis task
●Group 1: Day-life lab activities coaching (Panagiotis Arapitsas) PDF
●Group 2: Annotation and structure elucidation coaching (Marynka Ulaszewska) PDF
Afternoon session 14:30-17.00 (Central European Time)
SPEAKERS & TRAINERS
Felix Amaladoss | famaladoss@ebi.ac.uk | Software Developer – Metabolights – O’Donovan team: Metabolomics, UK
Panagiotis Arapitsas | panagiotis.arapitsas@fmach.it parapitsas@uniwa.gr | Fondazione Edmund Mach, San Michele All’Adige, ITALY; University of West Attica, GREECE
Éric Duchêne | eric.duchene@inrae.fr | Food and Environment, INRAE Colmar, FRANCE
Pietro Franceschi | pietro.franceschi@fmach.it | Fondazione Edmund Mach, San Michele All’Adige, ITALY
Mar Garcia-Aloy | mar.garcia@fmach.it | Fondazione Edmund Mach, San Michele All’Adige, ITALY
Fulvio Mattivi | fulvio.mattivi@unitn.it | University of Trento, ITALY
Thomas Payne | payne@ebi.ac.uk | Scientific Database Curator Metabolights – O’Donovan team: Metabolomics, UK
Stefania Savoi | stefania.savoi@unito.it | University of Turin, ITALY
Marynka Ulaszewska | marynka.ulaszewska@thermofisher.com | Thermo Fisher Scientific, Milan, ITALY
Christina Virgiliou | cr_virgi@hotmail.com | Aristotle University of Thessaloniki, Biomic AUTh, Center for Interdisciplinary Research and Innovation, GREECE
SELECTION CRITERIA OF TRAINEES
Evaluation of applications will be based on the following criteria:
– Postdocs, Ph.D. students, PIs, and bioinformaticians working in metabolomics related to grapevine with a high motivation to spread these good practices learned during the training school.
– A maximum of 30 trainees will be selected for the practical parts (day 2 and 3) based on a motivation letter or reason to participate
The training school is free to attend, but travel expenses will not be reimbursed as the training school will be online.
CONTACTS
Pietro Franceschi | pietro.franceschi@fmach.it
Stefania Savoi | stefania.savoi@unito.it