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INTEGRAPE 2021 - Achievements, industry needs and next steps

COST Action CA17111 - 3rd VIRTUAL ANNUAL MEETING
28th June - 2 July 2021

PLEASE CHECK THIS PAGE FOR UPDATES…

For further information contact ca17111.integrape@gmail.com

(All times are in Central European Summer Time)




Monday 28/06Tuesday 29/06Wednesday 30/06Thursday 1/07Friday 2/07
Morning 9am - 1pmSession 2 - Genomes and OMICsSession 4 - MultiOMICs, OMICs-Phenotypes

Session 5 - Biodiversity and Data Management
Meeting WrapUp CoreGroup Meeting ManagementCommittee Meeting
Afternoon 2pm - 6pmWelcome

Session 1 - Pilot Project Achievements

Session 3 - Data Management for Industry Use

Program

Monday 28 June 2021 AFTERNOON

2:00pm        Setup and Welcome – COST CA17111 MC Chair Mario Pezzotti and MC Vice-Chair Anne-Françoise Adam-Blondon

2:20pm        Melane Vivier (Stellenbosch University, South Africa) XI ISGPB Announcement and COST Integrape involvement

Session 1 – Pilot Project Achievements   (Chairperson: Daniela Holtgräwe)

2:30pm        Eric Duchêne (Food and Environment, INRAE Colmar, France) Guidelines on how to describe a grapevine experiment.

2:50pm        Jérôme Grimplet (Centro de Investigación y Tecnología Agroalimentaria de Aragón, Spain) Essential metadata for grapevine genomics sample submission

3:10pm        Stefania Savoi (Department of Food Quality and Nutrition, Research and Innovation Centre, Fondazione Edmund Mach, Italy; AGAP, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France) A tutorial for the FAIR data and metadata management in Vitis metabolomics science.

3:30pm           VIRTUAL COFFEE BREAK

4:00pm        Camille Rustenholz (Grapevine Genomics, INRAE Colmar, France) and Bianca Frommer (CeBiTec, Bielefeld University, Germany) What can we expect with the new version of the reference genome?

4:40pm        Doreen Ware  (Plant, Soil and Nutrition Research, Cold Spring Harbour Laboratory, NY, USA) Gramene 2021: Moving from a single reference to a Pan Genome resource

5:10pm        END OF SESSION

Tuesday 29 June 2021 MORNING

Session 2 – Genomes and OMICs (Chairperson: Anne-Françoise Adam-Blondon)

9:00am         Zhenchang Liang (Institute of Botany, the Chinese Academy of Sciences, Beijing, China)  Genomics and transcriptomics data of vitis germplasm

9:30am         Philippe Gallusci (University of Bordeaux, France) Methylome dynamics in grape plants: from berry development to stress responses

10:00am        Joachim Kopka  (Max Planck Institute of Molecular Plant Physiology, Germany) Metabolomics of the primary metabolome: Towards biological insights and suitable documentation for metabolomics meta-analysis

10:30am        Bruno Contreras (ENSEMBL, United Kingdom) A tour of Ensembl plants

11:00am            VIRTUAL COFFEE BREAK

11:30am        Nigel Robinson (Content Management, Clarivate, United Kingdom) Data sharing and best practices, the Data Citation Index

12:00am        Cyril Pommier (INRAE Paris, France) Interoperability of phenotyping and genotyping data in archives

12:30pm        Round-table discussion with STSM participants.  How to apply for ITC and STSM grants (Moderator – Ana Margarida Fortes – COST CA17111 STSM Coordinator)

1:00pm              END OF SESSION

Wednesday 30 June 2021 AFTERNOON

Session 3 – Data Management for Industry Use (Chairperson: Olivier Zekri)

2:30pm         Olivier Zekri (Mercier Frères Nursery, Vendée, France) “Nursery and data management : link between industry and research”

3:00pm         Camille Mietton (Mercier Novatech, Vendée, France) “Selection and data management : link between industry and research”

3:30pm             VIRTUAL COFFEE BREAK

4:00pm        Marianna Fasoli (E&J Gallo Winery, CA, USA) Molecular data generation and management in winegrowing research

4:30pm        Nick Dokoozlian (E&J Gallo Winery, CA, USA) Leveraging real-time analytics for winegrowing management

5:00pm        Round table discussion between all industry contributors (Moderator – Olivier Zekri)

6:00pm             END OF SESSION

Thursday 1 July 2021 MORNING

Session 4 – MultiOMICs, OMICS-Phenotypes (Chairperson: Tomás Matus)

9:00am         Bettina Berger (The Plant Accelerator, University of Adelaide, Australia) The phenotyping bottleneck: data acquisition is only the beginning

9:30am         Anna Kicherer (Julius Kühn-Institut, Institute for Grapevine Breeding Geilweilerhof, Germany) Experiences in sensor data recording, towards FAIR data management

10.00am        Nicola Segata (CIBIO University of Trento, Italy) Promises and challenges of environmental metagenomics

10:30am             VIRTUAL COFFEE BREAK – END OF SESSION

Session 5 – Biodiversity and Data Management (Chairperson: Reinhard Töpfer)

11:00am        Erika Maul (Julius Kühn-Institut, Institute for Grapevine Breeding Geilweilerhof, Germany) Fundamental steps to harmonize genetic resources for trueness to type

11:20am        Gregorio Muñoz (Instituto Madrileño de Investigación y Desarrollo Rural, Agrario y Alimentario (IMIDRA), Finca “El Encín”, Spain), European Grapevine Genebanks collaboration to clear up unsolved identities

11:40am        Manna Crespan (CREA, Conegliano, Italy) “The management of a large, ever-evolving collection at CREA – Viticulture and Enology of Conegliano (Italy)”

12:00am         Anne-Françoise Adam-Blondon (INRAE, Paris, France) FAIR characterization data on genetic resources: making it real?

12:20pm        Round-table (Moderator – Reinhard Töpfer)

1:00pm               END OF SESSION

Friday 2 July 2021 – MORNING

9:00am           Annual Meeting WrapUp

10:00am         COST Core Group Meeting (COST Action CA17111 CoreGroup members only)

11:30am         COST Management Committee meeting (COST Action CA17111 Management Committee members only)

1:00pm               END OF MEETING

Organization and Scientific Committee

Anne-Françoise Adam-Blondon

Anne-Marie Digby

Astrid Forneck

Ana Margarida Fortes

Jérôme Grimplet

Daniela Holtgräwe

Fulvio Mattivi

Camille Meitton

Mario Pezzotti

Camille Rustenholz

Reinhard Töpfer

Olivier Zekri

Sponsor

SEQUENTIA - Sponsor Integrape 2021

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