Working Group 3

Working Group 3
We will develop guidelines for the processing and analysis of sequence variation, transcriptomics, proteomics, metabolomics, and phenotypic datasets, using whatever information is available about the samples and analytical protocols. These metadata will be housed alongside the processed data as potential indicators of data quality. We will adopt the guidelines of the International Grape Genome Program for standardising the nomenclature for locus identifiers and defining conventions forgrapevine gene naming. A new version of the annotation of the grapevine reference genome will be developed for this purpose. 
Prof Johan TRYGG
Computational Life Science Cluster (CLiC)
Department of Chemistry
Umeå University
Linneaus vag 10
Umeå
Sweden

WG3 Members:

  • WG3 leader: Johan Trygg, Computational Life Science Cluster (CLiC), Department of Chemistry, Umeå University, Umeå, Sweden
  • WG3 vice-leader: Jerome Grimplet, Centro de Investigación y Tecnología Agroalimentaria de Aragón, Zaragoza, Spain
  • Irena Budic-Leto, PhD, Institute for Adriatic Crops and Karst Reclamation Put Duilova 11, Croatia
  • Laura Costantini, Fondazione Edmund Mach - Istituto Agrario san michele all'adige,, Italy
  • Tomas Matus, Carrer de la Vall Moronta, Parc de Recerca UAB, Spain
  • Pietro Lio, University of Cambridge, United Kingdom
  • Ivan Tsvetkov, Plant Genetic Resources, Agrobioinstitute, Bulgaria
  • Krasimir Russanov, Molecular Genetics Group, Agrobioinstitute, Bulgaria
  • Marco Moretto, Edmund Mach Foundation, Research and Innovation Centre, Italy
  • Aliki kapazoglou, Hellenic Agricultural Organization, Institute of Olive Tree, Greece
  • Nicola Vitulo, PhD, Department of Biotechnology, Uni Verona, Italy
  • Stefania Pilati, PhD, Innovation and Research Center - Fondazione Edmund Mach, Italy
  • Rachel Davidovich-Rikanati, Department of Vegetable Crops, Newe Ya’ar Research Center,, Israel
  • Markus Rienth, University of Sciences and Art Western Switzerland, Switzerland
  • Kocsis László, Department of Horticulture, University of Pannonia, Hungary
  • Nabil Girollet, Ecophysiologie et Génomique Fonctionnelle de la Vigne, France
  • Alessandro Vannozzi, Dipartimento di Agronomia Animali Alimenti Risorse Naturali e Ambiente, Università di Padova, Italy
  • Fabio Palumbo, DAFNAE, Campus of Agripolis, Italy
  • Kristina Gruden, NIB, Slovenia
  • Marusa Pompe Novak, NIB, Slovenia
  • Rita Vignani, University of Siena, Italy
  • Gheorge Savin, ISPHTA, Moldova
  • Ivan Baca, ISPHTA, Moldova
  • Vladimir Cornea, ISPHTA, Moldova
  • Dimitrios Taskos, Hellenic Agricultural Organization, Institute of Olive Tree, Greece
  • Doreen Ware, USDA, USA, USA
  • Georgios Merkouropoulos, Hellenic Agricultural Organization, Institute of Olive Tree, Greece
  • Ana M. Fortes, FCUL, Lisbon, Portugal
  • Herlander Azevedo, CIBTO, University of Porto, Portugal, Portugal
  • Dora Pitsoli, Hellenic Agricultural Organization, Institute of Olive Tree, Greece
  • Ludger Hausmann, JKI Geilweilerkof, Germany
  • Camille Rustenholz, University of Strasbourg, INRA, France

 

 

 

    

Important Dates

Register now to our second version of METHADA 2020: eHands on - Virtual Training School in Transcriptomic Metadata Handling and Data Analysis. (30 Nov 2020 – 4 Dec 2020). You may register either as a trainee (Applications now CLOSED) or as an Observer. Register soon!
More info at METHADA 2020 eHandsOn


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